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Info • Piromyces sp. UH3-1 v1.0
Please note that this organism is for archival use only. Please see the current Piromyces sp. UH3-1 v2.0 site for the latest data and information.


[March 2020] The Piromyces sp. UH3-1 v1.0 genome was sequenced with PacBio, assembled with MECAT, and annotated with the JGI Annotation Pipeline.

Summary statistics for the Piromyces sp. UH3-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 87.95
Sequencing read coverage depth 33.02x
# of contigs 543
# of scaffolds 543
# of scaffolds >= 2Kbp 540
Scaffold N50 30
Scaffold L50 (Mbp) 0.87
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.44, 3.49, 2.57

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46137 40363 87.5%
Ests est.fasta 81793148 81236514 99.3%

Gene Models FilteredModels2
length (bp) of: average median
gene 2338 1836
transcript 1752 1373
exon 386 157
intron 167 120
protein length (aa) 521 384
exons per gene 4.54 3
# of gene models 16655




The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.