Status
[March 2020] The Piromyces sp. UH3-1 v1.0 genome was sequenced with PacBio, assembled with MECAT, and annotated with the JGI Annotation Pipeline.
Summary statistics for the Piromyces sp. UH3-1 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 87.95 |
| Sequencing read coverage depth | 33.02x |
| # of contigs | 543 |
| # of scaffolds | 543 |
| # of scaffolds >= 2Kbp | 540 |
| Scaffold N50 | 30 |
| Scaffold L50 (Mbp) | 0.87 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.44, 3.49, 2.57 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 46137 | 40363 | 87.5% |
| Ests | est.fasta | 81793148 | 81236514 | 99.3% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 2338 | 1836 |
| transcript | 1752 | 1373 |
| exon | 386 | 157 |
| intron | 167 | 120 |
| description: | ||
| protein length (aa) | 521 | 384 |
| exons per gene | 4.54 | 3 |
| # of gene models | 16655 |
Collaborators
- Kevin Solomon, Purdue University, IN
Links
- JGI PhyloGroup Portals: Fungi Chytridiomycota Neocallimastigomycetes
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
