Info • Phlebopus sp. FC_14 v1.0
Please note that this organism is for archival use only. Please see the current Phlebopus sp. FC_14 v2.0 site for the latest data and information.

Status

[April 2019] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assemblied separately and is available on the Download page.

Summary statistics for the Phlebopus sp. FC_14 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.51
Sequencing read coverage depth 419.78x
# of contigs 354
# of scaffolds 354
# of scaffolds >= 2Kbp 340
Scaffold N50 8
Scaffold L50 (Mbp) 1.57
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.23, 3.00, 2.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 85153 82289 96.6%
Ests est.fasta 209185547 206468837 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1876 1623
transcript 1541 1318
exon 241 149
intron 64 56
description:
protein length (aa) 453 370
exons per gene 6.39 5
# of gene models 9249


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.