Info • Pisolithus orientalis OTSU v2.0

Status

[December 2019] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assemblied separately and is available on the Download page.

Summary statistics for the Pisolithus orientalis OTSU v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 58.00
Sequencing read coverage depth 328.07x
# of contigs 537
# of scaffolds 537
# of scaffolds >= 2Kbp 536
Scaffold N50 26
Scaffold L50 (Mbp) 0.59
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.35, 2.31, 2.17


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83147 79970 96.2%
Ests est.fasta 103392563 102974923 99.6%


Gene Models FilteredModels2
length (bp) of: average median
gene 1764 1491
transcript 1407 1168
exon 224 143
intron 70 57
description:
protein length (aa) 410 325
exons per gene 6.29 5
# of gene models 12203


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Plett JM, Miyauchi S, Morin E, Plett K, Wong-Bajracharya J, de Freitas Pereira M, Kuo A, Henrissat B, Drula E, Wojtalewicz D, Riley R, Pangilinan J, Andreopoulos W, LaButti K, Daum C, Yoshinaga Y, Fauchery L, Ng V, Lipzen A, Barry K, Singan V, Guo J, Lebel T, Costa MD, Grigoriev IV, Martin F, Anderson IC, Kohler A
Speciation underpinned by unexpected molecular diversity in the mycorrhizal fungal genus Pisolithus.
Mol Biol Evol. 2023 Feb 22;():. doi: 10.1093/molbev/msad045

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.