Info • Pisolithus tinctorius Marx 270 v1.0
Please note that this organism is for archival use only. Please see the current Pisolithus tinctorius Marx 270 v2.0 site for the latest data and information.

Status

Assembly v1 (March 2012) is a draft assembly of Solexa gDNA reads. A total of 610 scaffolds and 71.0 Mbp were assembled using AllPathsLG.

Summary statistics for the Pisolithus tinctorius v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 71.01
Sequencing read coverage depth 74.0x
# of contigs 5915
# of scaffolds 610
# of scaffolds >= 2Kbp 491
Scaffold N50 36
Scaffold L50 (Mbp) 0.49
# of gaps 5305
% of scaffold length in gaps 13.3%
Three largest Scaffolds (Mbp) 2.37, 1.68, 1.62


RNAs Data set # sequences total # mapped to genome % mapped to genome
Ests NCBI_Sanger_ESTs 467 63 13.5%
RNA contigs Combest_RNA_contigs 183988 151646 82.4%
RNA contigs Rnnotator_RNA_contigs 58433 49276 84.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1277 924
transcript 1015 759
exon 247 165
intron 86 57
description:
protein length (aa) 290 199
exons per gene 4.11 3
# of gene models 22701


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.