Info • Penicillium jugoslavicum ITEM 17442 v1.0

Status

[July 2022] The Penicillium jugoslavicum ITEM 17442 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 38.44
Sequencing read coverage depth 164.65x
# of contigs 475
# of scaffolds 447
# of scaffolds >= 2Kbp 317
Scaffold N50 19
Scaffold L50 (Mbp) 0.64
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.24, 1.61, 1.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48990 46318 94.5%
Ests est.fasta 172639035 170720778 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1957 1720
transcript 1775 1564
exon 554 339
intron 85 65
description:
protein length (aa) 478 404
exons per gene 3.20 3
# of gene models 13606


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.