Info • Pleosporaceae sp. PMI_138 v1.0

Status

[October 2019] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Pleosporaceae sp. PMI_138 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.19
Sequencing read coverage depth 115.35x
# of contigs 120
# of scaffolds 120
# of scaffolds >= 2Kbp 118
Scaffold N50 12
Scaffold L50 (Mbp) 1.26
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.68, 2.22, 2.17


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34866 31080 89.1%
Ests est.fasta 58282462 56629580 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1778 1549
transcript 1642 1429
exon 600 380
intron 80 56
description:
protein length (aa) 467 386
exons per gene 2.74 2
# of gene models 14035


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.