Info • Pleospora avicennia ATCC 66911 v1.0


[June 2018] The Pleospora avicennia ATCC 66911 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pleospora avicennia v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.97
Sequencing read coverage depth 78.3x
# of contigs 435
# of scaffolds 104
# of scaffolds >= 2Kbp 76
Scaffold N50 4
Scaffold L50 (Mbp) 4.39
# of gaps 331
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 8.30, 5.54, 4.68

Gene Models FilteredModels1
length (bp) of: average median
gene 1626 1377
transcript 1459 1218
exon 500 288
intron 89 59
protein length (aa) 486 406
exons per gene 2.92 3
# of gene models 11537


Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.