Info • Plectosphaerella cucumerina MPI-SDFR-AT-0117 v1.0


[June 2019] The Plectosphaerella cucumerina MPI-SDFR-AT-0117 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Plectosphaerella cucumerina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.93
Sequencing read coverage depth 248.39x
# of contigs 97
# of scaffolds 97
# of scaffolds >= 2Kbp 92
Scaffold N50 12
Scaffold L50 (Mbp) 1.04
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.56, 2.36, 2.29

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 60051 28176 46.9%
Ests est.fasta 12898259 12700869 98.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1782 1572
transcript 1635 1443
exon 569 340
intron 80 58
protein length (aa) 481 415
exons per gene 2.87 2
# of gene models 12460


Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.