Info • Pleurotus eryngii ATCC 90797 v1.0

Status

(Jun 2015) The Pleurotus eryngii IJFM A732 (=ATCC 90797) genome was sequenced using the Illumina platform, and assembled with AllPathsLG version R49403.

Summary statistics for the Pleurotus eryngii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.61
Sequencing read coverage depth 96.7x
# of contigs 1684
# of scaffolds 609
# of scaffolds >= 2Kbp 487
Scaffold N50 54
Scaffold L50 (Mbp) 0.24
# of gaps 1075
% of scaffold length in gaps 3.0%
Three largest Scaffolds (Mbp) 1.22, 1.02, 0.83


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48628 47548 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1621 1340
transcript 1318 1077
exon 236 148
intron 68 57
description:
protein length (aa) 379 300
exons per gene 5.59 4
# of gene models 15960


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.