Status
[January 2025] The Alternaria sp. Myco 013-3.2 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.02 |
| Sequencing read coverage depth | 38.74x |
| # of contigs | 22 |
| # of scaffolds | 22 |
| # of scaffolds >= 2Kbp | 22 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 2.77 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.50, 3.97, 3.57 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2000 | 1548 |
| transcript | 1725 | 1395 |
| exon | 547 | 314 |
| intron | 130 | 57 |
| description: | ||
| protein length (aa) | 575 | 465 |
| exons per gene | 3.15 | 3 |
| # of gene models | 11124 |
Collaborators
- Sara Branco, University of Colorado Denver, Denver, CO
- Jose Gonzalez, University of Colorado Denver, Denver, CO
- Andrew Wilson, Denver Botanic Gardens, Denver, CO
Links
- JGI Myco-Ed homepage
- JGI Myco-Ed Genome Group Portal
- JGI Ecogroup Portal: Endophytic_fungi
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales Pleosporaceae Alternaria
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
