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Info • Pleurotus ostreatus PC15 v1.0
Please note that this organism is for archival use only. Please see the current Pleurotus ostreatus PC15 v2.0 site for the latest data and information.

Status

v1.0 (May 2009):The Pleurotus ostreatus PC15 genome sequence assembly v1.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Pleurotus ostreatus PC15 v1.0 release:

Nuclear Genome Assembly v1.0
Nuclear genome size(Mbp) 34.3
Sequencing read coverage depth 8.67x
Reported # of contigs 249
# of nuclear scaffolds 19
# of nuclear scaffolds >2 kb 18
Nuclear scaffold N/L50 5/3.3 Mbp
Three largest Scaffolds (Mbp) 4.8
4.6
3.6

Gene Models v1.01
length (bp) of: average
gene 1,772
transcript 1,377
exon 217
intron 76
description:
protein length (aa) 445
exons per gene 6.4
# of gene models 11.603
Density (Genes/Mbp) 338

[1] FilteredModels5

ESTs Data set # sequences total # mapped to genome # not mapped to genome % mapped to genome
ESTs PleosPC15_Ests_Fruit_bodies_20080420213521_good_ESTs 13,184 12,869 315 98%
PleosPC9_Ests_20080420213541_good_ESTs 13,931 13,541 390 97%

Collaborators:

Links:

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.