Info • Pneumocystis carinii B80

Status

The genome sequence and gene models of Pneumocystis carinii B80 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 7.66
Sequencing read coverage depth
# of contigs 62
# of scaffolds 62
# of scaffolds >= 2Kbp 61
Scaffold N50 7
Scaffold L50 (Mbp) 0.47
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.64, 0.59, 0.57


Gene Models ExternalModels
length (bp) of: average median
gene 1722 1394
transcript 1485 1179
exon 253 155
intron 50 47
description:
protein length (aa) 465 359
exons per gene 5.88 5
# of gene models 3646


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ma L, Chen Z, Huang da W, Kutty G, Ishihara M, Wang H, Abouelleil A, Bishop L, Davey E, Deng R, Deng X, Fan L, Fantoni G, Fitzgerald M, Gogineni E, Goldberg JM, Handley G, Hu X, Huber C, Jiao X, Jones K, Levin JZ, Liu Y, Macdonald P, Melnikov A, Raley C, Sassi M, Sherman BT, Song X, Sykes S, Tran B, Walsh L, Xia Y, Yang J, Young S, Zeng Q, Zheng X, Stephens R, Nusbaum C, Birren BW, Azadi P, Lempicki RA, Cuomo CA, Kovacs JA
Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Nat Commun. 2016 Feb 22;7():10740. doi: 10.1038/ncomms10740

Links

Funding

This project was not sequenced at the JGI.