Join us for PhycoCosm and MycoCosm webinars on March 9 and 11, 2021!
Info • Phycomyces nitens S609 v1.0

Status

[May 2017] The Phycomyces nitens S609 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phycomyces nitens S609 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.99
Sequencing read coverage depth 204.2x
# of contigs 191
# of scaffolds 191
# of scaffolds >= 2Kbp 179
Scaffold N50 26
Scaffold L50 (Mbp) 0.49
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.19, 1.11, 1.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 66129 61057 92.3%
Ests est.fasta 163875460 161053008 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1680 1428
transcript 1396 1176
exon 295 174
intron 78 64
description:
protein length (aa) 398 321
exons per gene 4.73 4
# of gene models 11877


Collaborators

Dr. Alexander Idnurm, University of Melbourne, Australia

Dr. Luis Corrochano, University of Seville, Spain

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.