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Info • Podospora appendiculata CBS 314.62 v1.0

Status

[May 2018] The Podospora appendiculata CBS 314.62 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Podospora appendiculata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.95
Sequencing read coverage depth 279.8x
# of contigs 34
# of scaffolds 34
# of scaffolds >= 2Kbp 34
Scaffold N50 2
Scaffold L50 (Mbp) 11.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 13.35, 11.24, 5.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31252 30646 98.1%
Ests est.fasta 106991664 106936441 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1895 1646
transcript 1696 1457
exon 586 358
intron 107 77
description:
protein length (aa) 480 395
exons per gene 2.89 2
# of gene models 11955


Collaborators

Pierre Gladieux, INRA, France

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.