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Info • Podospora curvicolla TEP21a v1.0

Status

[December 2015] The Podospora curvicola TEP21a genome was sequenced using the Illumina platform and assembled together with AllPathsLG release version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Podospora curvicola TEP21a v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.70
Sequencing read coverage depth 144.8x
# of contigs 1105
# of scaffolds 938
# of scaffolds >= 2Kbp 860
Scaffold N50 125
Scaffold L50 (Mbp) 0.08
# of gaps 167
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 0.55, 0.47, 0.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27244 26040 95.6%
Ests est.fasta 119233746 115703200 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1642 1377
transcript 1509 1249
exon 601 389
intron 90 61
description:
protein length (aa) 418 331
exons per gene 2.51 2
# of gene models 13440


Collaborators

Kabir Peay, Stanford University

Jason Stajich, UC Riverside

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.