Info • Podospora fimiseda CBS 990.96 v1.0

Status

[March 2022] The Podospora fimiseda CBS 990.96 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 36.30
Sequencing read coverage depth 185.89x
# of contigs 675
# of scaffolds 626
# of scaffolds >= 2Kbp 545
Scaffold N50 56
Scaffold L50 (Mbp) 0.18
# of gaps 49
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.76, 0.75, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41186 39459 95.8%
Ests est.fasta 97254860 96040738 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1827 1565
transcript 1687 1438
exon 696 439
intron 100 65
description:
protein length (aa) 475 383
exons per gene 2.42 2
# of gene models 12263


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Mol Phylogenet Evol. 2023 Oct 10;189():107938. doi: 10.1016/j.ympev.2023.107938

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.