Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Podosordaria jugoyasan CBS 670.77 v1.0

Status

[June 2020] The Podosordaria jugoyasan CBS 670.77 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Podosordaria jugoyasan CBS 670.77 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.68
Sequencing read coverage depth 21.64x
# of contigs 33
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 7
Scaffold L50 (Mbp) 2.73
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.52, 4.46, 4.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53311 52331 98.2%
Ests est.fasta 177342918 176463166 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2077 1854
transcript 1868 1655
exon 612 373
intron 104 75
description:
protein length (aa) 490 414
exons per gene 3.05 3
# of gene models 10690


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.