Info • Polyporus brumalis BRFM 1820 v1.0

Status

[May 2015] Polyporus brumalis BRFM 1820 v1.0 is a standard draft produced with Illumina reads and assembled with AllPathsLG R49403, (Gnerre et al. 2010).

 

Summary statistics for the Polyporus brumalis BRFM 1820 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.72
Sequencing read coverage depth 94.9
# of contigs 1040
# of scaffolds 621
# of scaffolds >= 2Kbp 485
Scaffold N50 34
Scaffold L50 (Mbp) 0.36
# of gaps 419
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 1.62, 1.41, 1.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 45971 45360 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1701 1447
transcript 1392 1176
exon 266 161
intron 75 59
description:
protein length (aa) 395 326
exons per gene 5.24 4
# of gene models 18244


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.