Info • Polyporus squamosus CCBS 676 v1.0

Status

[September 2017] The Polyporus squamosus CCBS 676 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Polyporus squamosus CCBS 676 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.47
Sequencing read coverage depth 77.44x
# of contigs 1227
# of scaffolds 1227
# of scaffolds >= 2Kbp 1206
Scaffold N50 99
Scaffold L50 (Mbp) 0.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.13, 0.95, 0.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59923 53397 89.1%
Ests est.fasta 174938242 168954516 96.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1792 1551
transcript 1432 1225
exon 244 153
intron 76 60
description:
protein length (aa) 420 347
exons per gene 5.87 5
# of gene models 15283


Collaborators

Francis Martin, INRA Nancy, France

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.