Info • Porodaedalea chrysoloma FP-135951 v1.0

Status

(Jul 2016) The Porodaedalea chrysoloma genome was sequenced using Illumina and PacBio technology, assembled with PBJelly, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Porodaedalea chrysoloma FP-135951 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.69
Sequencing read coverage depth 50
# of contigs 1684
# of scaffolds 496
# of scaffolds >= 2Kbp 330
Scaffold N50 25
Scaffold L50 (Mbp) 0.55
# of gaps 1188
% of scaffold length in gaps 7.0%
Three largest Scaffolds (Mbp) 3.06, 1.62, 1.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 101470532 99679139 98.2%
Other JGI_RNA_contigs 60218 58324 96.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1733 1478
transcript 1401 1164
exon 243 147
intron 72 60
description:
protein length (aa) 412 332
exons per gene 5.77 4
# of gene models 13562


Collaborators

Daniel L. Lindner, US Forest Service, Center for Forest Mycology Research

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.