Info • Poronia punctata CBS 180.79 v1.0

Status

[August 2019] The Poronia punctata CBS 180.79 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Poronia punctata CBS 180.79 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.99
Sequencing read coverage depth 79.56x
# of contigs 1401
# of scaffolds 1356
# of scaffolds >= 2Kbp 1073
Scaffold N50 97
Scaffold L50 (Mbp) 0.14
# of gaps 45
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.69, 0.68, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55153 54065 98.0%
Ests est.fasta 171682374 170982819 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2101 1861
transcript 1892 1662
exon 609 375
intron 101 75
description:
protein length (aa) 492 412
exons per gene 3.11 3
# of gene models 9862


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.