Info • Powellomyces hirtus BR81 v1.0

Status

[April 2018] The Powellomyces hirtus BR81 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Powellomyces hirtus BR81 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.43
Sequencing read coverage depth 431.14x
# of contigs 85
# of scaffolds 85
# of scaffolds >= 2Kbp 84
Scaffold N50 10
Scaffold L50 (Mbp) 1.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.12, 2.03, 1.93


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39288 38310 97.5%
Ests est.fasta 82208141 81762955 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2017 1672
transcript 1702 1394
exon 358 193
intron 86 74
description:
protein length (aa) 484 375
exons per gene 4.76 4
# of gene models 9359


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.