Info • Penicillium paneum ITEM 17449 v1.0

Status

[August 2022] The Penicillium paneum ITEM 17449 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 26.54
Sequencing read coverage depth 232.67x
# of contigs 89
# of scaffolds 79
# of scaffolds >= 2Kbp 62
Scaffold N50 8
Scaffold L50 (Mbp) 1.20
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.42, 1.97, 1.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38535 38122 98.9%
Ests est.fasta 44733895 44323347 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1938 1665
transcript 1767 1524
exon 551 328
intron 79 60
description:
protein length (aa) 486 402
exons per gene 3.21 3
# of gene models 10016


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.