Info • Prasinoderma coloniale CCMP1413

Status

The Prasinoderma coloniale CCMP1413 genome assembly and gene models have not been determined by the JGI, but were downloaded from the CNGB Nucleotide Sequence Archive (accession no. CNP0000924) on July 20, 2020. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 212 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by CNGB and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 25.32
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 7
Scaffold L50 (Mbp) 1.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.60, 2.45, 2.23


Gene Models FilteredModels1
length (bp) of: average median
gene 1921 1572
transcript 1637 1311
exon 725 398
intron 227 164
description:
protein length (aa) 500 398
exons per gene 2.26 2
# of gene models 6927


Genome Reference(s)

Funding

This project was not sequenced at the JGI.