Info • Protomyces inouyei

Status

The genome of Protomyces inouyei was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora (spatafoj@science.oregonstate.edu). JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Protomyces inouyei genome v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 12.20
Sequencing read coverage depth 136.89x
# of contigs 1535
# of scaffolds 1535
# of scaffolds >= 2Kbp 508
Scaffold N50 101
Scaffold L50 (Mbp) 0.04
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.17, 0.16, 0.16


Gene Models ExternalModels
length (bp) of: average median
gene 1298 1033
transcript 1232 975
exon 713 381
intron 91 51
description:
protein length (aa) 411 325
exons per gene 1.73 1
# of gene models 7804


Collaborators

PI: Joey Spatafora, Oregon State University

Funding

This project was not sequenced at the JGI.