Status
This genome was sequenced by Tomotake Morita, Dai Kitamoto ([email protected]) et al. at the Research Institute for Innovation in Sustainable Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan (Genome Sequence of the Basidiomycetous Yeast Pseudozyma antarctica T-34, a Producer of the Glycolipid Biosurfactants Mannosylerythritol Lipids).
Summary statistics for the Pseudozyma antarctica T-34 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 18.07 |
| Sequencing read coverage depth | 20x |
| # of contigs | 744 |
| # of scaffolds | 27 |
| # of scaffolds >= 2Kbp | 27 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.73 |
| # of gaps | 717 |
| % of scaffold length in gaps | 1.3% |
| Three largest Scaffolds (Mbp) | 2.38, 2.07, 1.56 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2000 | 1632 |
| transcript | 1823 | 1509 |
| exon | 1057 | 622 |
| intron | 176 | 96 |
| description: | ||
| protein length (aa) | 608 | 503 |
| exons per gene | 1.72 | 1 |
| # of gene models | 6640 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Morita T, Koike H, Koyama Y, Hagiwara H, Ito E, Fukuoka T, Imura T, Machida M, Kitamoto D
Genome Sequence of the Basidiomycetous Yeast Pseudozyma antarctica T-34, a Producer of the Glycolipid Biosurfactants Mannosylerythritol Lipids.
Genome Announc. 2013 Apr 4;1(2):e0006413. doi: 10.1128/genomeA.00064-13
Morita T, Koike H, Koyama Y, Hagiwara H, Ito E, Fukuoka T, Imura T, Machida M, Kitamoto D
Genome Sequence of the Basidiomycetous Yeast Pseudozyma antarctica T-34, a Producer of the Glycolipid Biosurfactants Mannosylerythritol Lipids.
Genome Announc. 2013 Apr 4;1(2):e0006413. doi: 10.1128/genomeA.00064-13
Funding
This project was not sequenced at the JGI.
