Status
The genome of Pseudographis elatina was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Pseudographis elatina genome
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.12 |
| Sequencing read coverage depth | 90.10x |
| # of contigs | 1881 |
| # of scaffolds | 601 |
| # of scaffolds >= 2Kbp | 562 |
| Scaffold N50 | 88 |
| Scaffold L50 (Mbp) | 0.12 |
| # of gaps | 1280 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 0.45, 0.43, 0.38 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1940 | 1537 |
| transcript | 1636 | 1320 |
| exon | 456 | 248 |
| intron | 120 | 64 |
| description: | ||
| protein length (aa) | 545 | 440 |
| exons per gene | 3.59 | 3 |
| # of gene models | 11338 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
