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Info • Pseudographis elatina

Status

The genome of Pseudographis elatina was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora (spatafoj@science.oregonstate.edu). JGI tools were used to automatically annotate predicted proteins.

 

Summary statistics for the Pseudographis elatina genome v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.12
Sequencing read coverage depth 90.10x
# of contigs 1881
# of scaffolds 601
# of scaffolds >= 2Kbp 562
Scaffold N50 88
Scaffold L50 (Mbp) 0.12
# of gaps 1280
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.45, 0.43, 0.38


Gene Models ExternalModels
length (bp) of: average median
gene 1940 1537
transcript 1636 1320
exon 456 248
intron 120 64
description:
protein length (aa) 545 440
exons per gene 3.59 3
# of gene models 11338


Collaborators

PI: Joey Spatafora, Oregon State University

Funding

This project was not sequenced at the JGI.