Info • Pseudozyma flocculosa PF-1

Status

The genome sequence and gene models of Pseudozyma flocculosa PF-1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 23.31
Sequencing read coverage depth
# of contigs 805
# of scaffolds 39
# of scaffolds >= 2Kbp 39
Scaffold N50 10
Scaffold L50 (Mbp) 0.92
# of gaps 766
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 1.98, 1.48, 1.27


Gene Models ExternalModels
length (bp) of: average median
gene 2100 1747
transcript 1846 1518
exon 658 291
intron 143 115
description:
protein length (aa) 615 506
exons per gene 2.80 2
# of gene models 6877


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lefebvre F, Joly DL, Labbé C, Teichmann B, Linning R, Belzile F, Bakkeren G, Bélanger RR
The transition from a phytopathogenic smut ancestor to an anamorphic biocontrol agent deciphered by comparative whole-genome analysis.
Plant Cell. 2013 Jun;25(6):1946-59. doi: 10.1105/tpc.113.113969

Funding

This project was not sequenced at the JGI.