Info • Pseudozyma hubeiensis SY62

Status

This genome was sequenced by Masaaki Konishi ([email protected]) et al. in Department of Biotechnology and Environmental Chemistry, Kitami Institute of Technology, Kitami-shi, Hokkaido, Japan (Draft Genome Sequence of the Basidiomycetous Yeast-Like Fungus Pseudozyma hubeiensis SY62, Which Produces an Abundant Amount of the Biosurfactant Mannosylerythritol Lipids).

Draft sequencing was performed by the Illumina HiSeq system with a total of 62,228,512 reads. The sequence reads from the paired-end library (400 bp) were initially assembled into 160 contigs and 74 scaffolds using Augustus v1.2.08. The contigs include a total genome size of 18,442,938 bp, and the G+C content is 56.5%

Summary statistics for the Pseudozyma hubeiensis SY62 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.44
Sequencing read coverage depth 200x
# of contigs 159
# of scaffolds 74
# of scaffolds >= 2Kbp 61
Scaffold N50 13
Scaffold L50 (Mbp) 0.45
# of gaps 85
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.40, 1.09, 1.02


Gene Models ExternalModels
length (bp) of: average median
gene 1867 1512
transcript 1668 1338
exon 1138 678
intron 428 205
description:
protein length (aa) 556 446
exons per gene 1.47 1
# of gene models 7472


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Konishi M, Hatada Y, Horiuchi J
Draft Genome Sequence of the Basidiomycetous Yeast-Like Fungus Pseudozyma hubeiensis SY62, Which Produces an Abundant Amount of the Biosurfactant Mannosylerythritol Lipids.
Genome Announc. 2013 Jun 27;1(4):. doi: 10.1128/genomeA.00409-13

Funding

This project was not sequenced at the JGI.