Info • Pseudovirgaria hyperparasitica CBS 121739 v1.0

Status

[Oct 2014] The Pseudovirgaria hyperparasitica genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pseudovirgaria hyperparasitica CBS 121739 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.44
Sequencing read coverage depth 86.3x
# of contigs 408
# of scaffolds 122
# of scaffolds >= 2Kbp 102
Scaffold N50 9
Scaffold L50 (Mbp) 1.58
# of gaps 286
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 3.44, 2.46, 2.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 23993 23737 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1734 1502
transcript 1602 1380
exon 587 362
intron 78 56
description:
protein length (aa) 454 370
exons per gene 2.73 2
# of gene models 11232


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.