Status
The genome sequence and gene models of Pseudoloma neurophilia MK1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 5.25 |
| Sequencing read coverage depth | |
| # of contigs | 1603 |
| # of scaffolds | 1603 |
| # of scaffolds >= 2Kbp | 654 |
| Scaffold N50 | 182 |
| Scaffold L50 (Mbp) | 0.01 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.17, 0.08, 0.06 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 792 | 569 |
| transcript | 792 | 569 |
| exon | 792 | 569 |
| intron | n/a | 0 |
| description: | ||
| protein length (aa) | 264 | 189 |
| exons per gene | 1.00 | 1 |
| # of gene models | 3644 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ndikumana S, Pelin A, Williot A, Sanders JL, Kent M, Corradi N
Genome Analysis of Pseudoloma neurophilia: A Microsporidian Parasite of Zebrafish (Danio rerio).
J Eukaryot Microbiol. 2017 Jan;64(1):18-30. doi: 10.1111/jeu.12331
Ndikumana S, Pelin A, Williot A, Sanders JL, Kent M, Corradi N
Genome Analysis of Pseudoloma neurophilia: A Microsporidian Parasite of Zebrafish (Danio rerio).
J Eukaryot Microbiol. 2017 Jan;64(1):18-30. doi: 10.1111/jeu.12331
Links
- JGI PhyloGroup Portals: Fungi Microsporidia
Funding
This project was not sequenced at the JGI.
