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Info • Pseudocercospora ulei ERN8 v1.0

Status

[June 2019] The Pseudocercospora ulei ERN8 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pseudocercospora ulei v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 79.46
Sequencing read coverage depth 187.34x
# of contigs 418
# of scaffolds 418
# of scaffolds >= 2Kbp 413
Scaffold N50 54
Scaffold L50 (Mbp) 0.43
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.79, 1.63, 1.63


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38047 30450 80.0%
Ests est.fasta 192144740 183502081 95.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1750 1494
transcript 1628 1385
exon 741 432
intron 103 65
description:
protein length (aa) 467 378
exons per gene 2.20 2
# of gene models 7918


Collaborators

Eduardo S. G. Mizubuti, Universidade Federal de Viçosa, Brasil

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.