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Info • Psilocybe serbica v1.0

Status

[June 2018] Genome sequencing and assembly of Psilocybe serbica was carried out by the Department of Pharmaceutical Microbiology at the Friedrich-Schiller-University Jena, Germany and annotated using the JGI fungal annotation pipeline. The sequenced isolate was collected in the Upper Lusatia area, Germany.

Summary statistics for the Psilocybe serbica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.29
Sequencing read coverage depth 1.0x
# of contigs 217
# of scaffolds 217
# of scaffolds >= 2Kbp 217
Scaffold N50 9
Scaffold L50 (Mbp) 2.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.96, 5.50, 4.43


Gene Models FilteredModels1
length (bp) of: average median
gene 1718 1434
transcript 1319 1080
exon 209 128
intron 77 59
description:
protein length (aa) 440 360
exons per gene 6.30 5
# of gene models 15481


Collaborators

Dirk Hoffmeister, Hans Knöll Institute, Germany

Genome Reference(s)

Funding

This project was not sequenced at the JGI.