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Info • Puccinia coronata avenae 12NC29

Status

The genome sequence and gene models of Puccinia coronata avenae 12NC29 were not determined by the Joint Genome Institute (JGI), but were provided by the Figueroa lab on August 4th, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the Figueroa lab and is therefore not automatically updated.

If you use this genome in your research, please cite:

Miller, M. E., Zhang, Y., Omidvar, V., Sperschneider, J., Schwessinger, B., Raley, C., Palmer, J. M., Garnica, D., Upadhyayah, N., Rathjen, J., Taylor, J. M., Park, R. F., Dodds, P. N., Hirsch, C. D., Kianian, S. F. and Figueroa, M. 2017. De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust. BioRxiv. https://doi.org/10.1101/179226

Summary statistics for the Puccinia coronata-avenae 12NC29 release are below.
Genome Assembly
Genome Assembly size (Mbp) 166.28
Sequencing read coverage depth
# of contigs 1727
# of scaffolds 1727
# of scaffolds >= 2Kbp 1724
Scaffold N50 286
Scaffold L50 (Mbp) 0.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.19, 0.95, 0.81


Gene Models ExternalModels
length (bp) of: average median
gene 1545 1184
transcript 1127 825
exon 253 145
intron 123 89
description:
protein length (aa) 376 275
exons per gene 4.45 3
# of gene models 28270


Collaborators

Melania Figueroa, University of Minnesota

Genome Reference(s)

Funding

This project was not sequenced at the JGI.