Status
The genome sequence and annotations for Puccinia graminis f. sp. tritici v2.0 were acquired from The Broad Institute on July 6th, 2015.
Summary statistics for the Puccinia graminis f. sp.
tritici v2.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 88.64 |
| Sequencing read coverage depth | |
| # of contigs | 4557 |
| # of scaffolds | 392 |
| # of scaffolds >= 2Kbp | 392 |
| Scaffold N50 | 30 |
| Scaffold L50 (Mbp) | 0.96 |
| # of gaps | 4165 |
| % of scaffold length in gaps | 8.0% |
| Three largest Scaffolds (Mbp) | 3.08, 2.62, 2.57 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 1741 | 1420 |
| transcript | 1380 | 1107 |
| exon | 303 | 175 |
| intron | 104 | 88 |
| description: | ||
| protein length (aa) | 395 | 308 |
| exons per gene | 4.55 | 3 |
| # of gene models | 15979 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kües U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouzé P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F
Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
Proc Natl Acad Sci U S A. 2011 May 31;108(22):9166-71. doi: 10.1073/pnas.1019315108
Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kües U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouzé P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F
Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
Proc Natl Acad Sci U S A. 2011 May 31;108(22):9166-71. doi: 10.1073/pnas.1019315108
Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797
Funding
This project was not sequenced at the JGI.
