Info • Puccinia triticina Pt76


The genome sequence and gene models of Puccinia triticina Pt76 were not determined by the Joint Genome Institute (JGI), but were provided by Jana Sperschneider on May 16, 2021. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins.

Note: this assembly is of a dikaryon, and thus gene content is roughly doubled compared to haploid assemblies. Chromosomes are labeled according to haplotype. For example, chromosome 1 of haplotype A is labeled: ChrA_101, while chromosome 1 of haplotype B is labeled: ChrB_201. unassigned contigs are labeled 'tig_contigNumber'.

Genome Assembly
Genome Assembly size (Mbp) 253.66
Sequencing read coverage depth
# of contigs 541
# of scaffolds 288
# of scaffolds >= 2Kbp 288
Scaffold N50 16
Scaffold L50 (Mbp) 7.37
# of gaps 253
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.51, 9.25, 8.95

Gene Models ExternalModels
length (bp) of: average median
gene 1978 1671
transcript 1620 1349
exon 346 194
intron 92 82
protein length (aa) 409 324
exons per gene 4.68 4
# of gene models 31930




This project was not sequenced at the JGI.