Status
The genome sequence and gene models of Puccinia triticina Pt76 were not determined by the Joint Genome Institute (JGI), but were provided by Jana Sperschneider on May 16, 2021. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins.
Note: this assembly is of a dikaryon, and thus gene content is roughly doubled compared to haploid assemblies. Chromosomes are labeled according to haplotype. For example, chromosome 1 of haplotype A is labeled: ChrA_101, while chromosome 1 of haplotype B is labeled: ChrB_201. unassigned contigs are labeled 'tig_contigNumber'.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 253.66 |
| Sequencing read coverage depth | |
| # of contigs | 541 |
| # of scaffolds | 288 |
| # of scaffolds >= 2Kbp | 288 |
| Scaffold N50 | 16 |
| Scaffold L50 (Mbp) | 7.37 |
| # of gaps | 253 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 9.51, 9.25, 8.95 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1978 | 1671 |
| transcript | 1620 | 1349 |
| exon | 346 | 194 |
| intron | 92 | 82 |
| description: | ||
| protein length (aa) | 409 | 324 |
| exons per gene | 4.68 | 4 |
| # of gene models | 31930 |
Collaborators
- Melania Figueroa, CSIRO, Australia
- Jana Sperschneider, CSIRO, Australia
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Pucciniomycotina Pucciniales
Funding
This project was not sequenced at the JGI.
