Status
[December 2023] The Purpureocillium lilacinum D216_34 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 46.61 |
| Sequencing read coverage depth | 100.61x |
| # of contigs | 113 |
| # of scaffolds | 113 |
| # of scaffolds >= 2Kbp | 112 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.50 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.84, 6.52, 3.36 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 55704 | 52962 | 95.1% |
| Ests | est.fasta | 271582900 | 269482910 | 99.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1951 | 1613 |
| transcript | 1707 | 1422 |
| exon | 518 | 312 |
| intron | 108 | 65 |
| description: | ||
| protein length (aa) | 496 | 394 |
| exons per gene | 3.30 | 3 |
| # of gene models | 15350 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
