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Info • Purpureocillium sp. UdeA0106 v1.0

Status

[September 2016] The Purpureocillium sp. UdeA0106 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Purpureocillium sp. UdeA0106 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.08
Sequencing read coverage depth 136.1x
# of contigs 466
# of scaffolds 433
# of scaffolds >= 2Kbp 414
Scaffold N50 55
Scaffold L50 (Mbp) 0.21
# of gaps 33
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.70, 0.63, 0.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31409 30571 97.3%
Ests est.fasta 102293865 96793518 94.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1632 1379
transcript 1483 1242
exon 562 353
intron 93 65
description:
protein length (aa) 430 346
exons per gene 2.64 2
# of gene models 13642


Collaborators

Nadya Cardona at the Universidad de Antioquia, Colombia

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.