Status
This genome was sequenced by INRA - Aix Marseille Université. Please check their data use policies.
Summary statistics for the Pycnoporus cinnabarinus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.67 |
| Sequencing read coverage depth | |
| # of contigs | 2036 |
| # of scaffolds | 784 |
| # of scaffolds >= 2Kbp | 529 |
| Scaffold N50 | 54 |
| Scaffold L50 (Mbp) | 0.17 |
| # of gaps | 1252 |
| % of scaffold length in gaps | 1.5% |
| Three largest Scaffolds (Mbp) | 0.90, 0.79, 0.56 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1835 | 1514 |
| transcript | 1458 | 1182 |
| exon | 248 | 149 |
| intron | 79 | 59 |
| description: | ||
| protein length (aa) | 486 | 394 |
| exons per gene | 5.87 | 5 |
| # of gene models | 10442 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.
BMC Genomics. 2014 Jun 18;15():486. doi: 10.1186/1471-2164-15-486
Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.
BMC Genomics. 2014 Jun 18;15():486. doi: 10.1186/1471-2164-15-486
Funding
This project was not sequenced at the JGI.
