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Info • Pycnoporus cinnabarinus CIRM-BRFM 50 v1.0

Status

[January 2017] The Pycnoporus cinnabarinus CIRM-BRFM 50 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pycnoporus cinnabarinus CIRM-BRFM 50 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.14
Sequencing read coverage depth 22.03x
# of contigs 117
# of scaffolds 117
# of scaffolds >= 2Kbp 117
Scaffold N50 21
Scaffold L50 (Mbp) 0.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.27, 1.27, 1.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 85870 82680 96.3%
Ests est.fasta 142244839 139834991 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1803 1524
transcript 1469 1230
exon 251 154
intron 71 60
description:
protein length (aa) 431 348
exons per gene 5.85 5
# of gene models 12533


Collaborators

Eric Record and Marie-Noëlle Rosso, Biodiversité et Biotechnologie Fongique INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.