Info • Pycnoporus coccineus CIRM-BRFM 310 v1.0


The Pycnoporus coccineus genome was sequenced using the Illumina platform and assembled with AllPathsLG version R46652, (Gnerre et al., 2010).  The nuclear genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Pycnoporus coccineus BRFM 310 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.76
Sequencing read coverage depth 99.4
# of contigs 469
# of scaffolds 222
# of scaffolds >= 2Kbp 182
Scaffold N50 20
Scaffold L50 (Mbp) 0.47
# of gaps 247
% of scaffold length in gaps 1.3%
Three largest Scaffolds (Mbp) 1.55, 1.42, 1.31

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 32150 30279 94.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1852 1564
transcript 1509 1264
exon 256 154
intron 72 60
protein length (aa) 430 350
exons per gene 5.88 5
# of gene models 12690


Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.