Info • Pycnoporus coccineus ​CIRM-BRFM 1662 v1.0

Status

June 2014 - The Pycnoporus coccineus genome was sequenced using the Illumina platform and assembled with AllPathsLG version R46652, (Gnerre et al. 2010).

Summary statistics for the Pycnoporus coccineus CIRM1662 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.10
Sequencing read coverage depth 128.7
# of contigs 643
# of scaffolds 599
# of scaffolds >= 2Kbp 494
Scaffold N50 50
Scaffold L50 (Mbp) 0.18
# of gaps 44
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.86, 0.67, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 38089 36884 96.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1814 1544
transcript 1483 1260
exon 254 154
intron 71 60
description:
protein length (aa) 423 346
exons per gene 5.83 5
# of gene models 12798


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.