Info • Pycnoporus puniceus CIRM-BRFM 1868 v1.0

Status

(Mar 2016) The Pycnoporus puniceus CIRM-BRFM 1868 genome was sequenced using PacBio technology and assembled with Falcon, improved with finisherSC, polished with Quiver, and annotated using the JGI annotation pipeline.

Summary statistics for the Pycnoporus puniceus CIRM-BRFM 1868 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.26
Sequencing read coverage depth 97x
# of contigs 105
# of scaffolds 105
# of scaffolds >= 2Kbp 105
Scaffold N50 12
Scaffold L50 (Mbp) 0.79
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.00, 1.82, 1.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51087 48914 95.7%
Ests est.fasta 43420270 43109843 99.3%


Gene Models FilteredModels2
length (bp) of: average median
gene 1924 1656
transcript 1571 1347
exon 253 153
intron 70 59
description:
protein length (aa) 446 365
exons per gene 6.21 5
# of gene models 10050


Collaborators

Eric Record

Marie-Noëlle Rosso, Biodiversité et Biotechnologie Fongique INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.