Info • Pycnoporus sanguineus CIRM-BRFM 1264 v1.0

Status

Feb 2013. Pycnoporus sanguineus BRFM 1264 was sequenced by researchers at Biotechnologie des Champignons Filamenteux, INRA - Aix Marseille Université using the 454 platform. It was then annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Pycnoporus sanguineus BRFM 1264 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.04
Sequencing read coverage depth 0.0
# of contigs 2046
# of scaffolds 657
# of scaffolds >= 2Kbp 330
Scaffold N50 35
Scaffold L50 (Mbp) 0.32
# of gaps 1389
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 1.25, 1.10, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 59139 57295 96.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1736 1450
transcript 1402 1159
exon 251 152
intron 75 60
description:
protein length (aa) 408 331
exons per gene 5.59 4
# of gene models 14165


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.