Info • Pyronema confluens CBS100304


This genome was sequenced by Stefanie Traeger, Minou Nowrousian et al Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany (The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution).

The genome was assembled from a combination of Illumina/Solexa and 454 reads. Gene models were predicted de novo based on homology and evidence from the RNA-seq data. 

Summary statistics for the Pyronema confluens CBS100304 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.03
Sequencing read coverage depth
# of contigs 1865
# of scaffolds 1588
# of scaffolds >= 2Kbp 1283
Scaffold N50 111
Scaffold L50 (Mbp) 0.14
# of gaps 277
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.60, 0.47, 0.47

Gene Models ExternalModels
length (bp) of: average median
gene 1674 1358
transcript 1093 795
exon 407 208
intron 98 63
protein length (aa) 364 265
exons per gene 2.69 2
# of gene models 13367

Genome Reference(s)


This project was not sequenced at the JGI.