Info • Pyronema domesticum CBS 144463 v1.0

Status

[October 2018] The Pyronema domesticum DOB7353 genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pyronema domesticum DOB7353 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 58.39
Sequencing read coverage depth 74.15x
# of contigs 78
# of scaffolds 78
# of scaffolds >= 2Kbp 78
Scaffold N50 13
Scaffold L50 (Mbp) 1.47
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.66, 2.94, 2.78


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35752 28286 79.1%
Ests est.fasta 166905966 131719209 78.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1694 1441
transcript 1493 1242
exon 490 309
intron 100 63
description:
protein length (aa) 423 332
exons per gene 3.05 3
# of gene models 11812


Collaborators

Tom Bruns at University of California Berkeley

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.