Info • Pyrenochaeta inflorescentiae CORFU0001 v1.0

Status

[July 2020] The Pyrenochaeta inflorescentiae CORFU0001 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pyrenochaeta inflorescentiae CORFU0001 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.53
Sequencing read coverage depth 30.46x
# of contigs 35
# of scaffolds 35
# of scaffolds >= 2Kbp 35
Scaffold N50 11
Scaffold L50 (Mbp) 1.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.95, 2.27, 2.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43696 36464 83.4%
Ests est.fasta 163293652 162294881 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1820 1601
transcript 1687 1473
exon 595 379
intron 75 55
description:
protein length (aa) 477 401
exons per gene 2.83 2
# of gene models 14563


Collaborators

 

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.