Info • Pyrenochaeta lycopersici MPI-SDFR-AT-0127 v1.0

Status

[July 2017] The Pyrenochaeta lycopersici MPI-SDFR-AT-0127 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pyrenochaeta lycopersici v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.27
Sequencing read coverage depth 92.45x
# of contigs 241
# of scaffolds 241
# of scaffolds >= 2Kbp 231
Scaffold N50 23
Scaffold L50 (Mbp) 0.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.51, 1.41, 1.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36926 35298 95.6%
Ests est.fasta 109768819 107682709 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1676 1455
transcript 1539 1332
exon 558 347
intron 80 57
description:
protein length (aa) 459 385
exons per gene 2.76 2
# of gene models 14311


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.