Info • Pyronema omphalodes CBS 144459 v1.0

Status

[January 2019] The Pyronema omphalodes DOB1672 genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pyronema omphalodes DOB1672 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.00
Sequencing read coverage depth 70.21x
# of contigs 260
# of scaffolds 260
# of scaffolds >= 2Kbp 259
Scaffold N50 30
Scaffold L50 (Mbp) 0.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.91, 1.72, 1.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41810 34254 81.9%
Ests est.fasta 60683358 42230515 69.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1739 1508
transcript 1534 1310
exon 498 309
intron 101 64
description:
protein length (aa) 431 345
exons per gene 3.08 3
# of gene models 10940


Collaborators

  • Tom Bruns at University of California Berkeley

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Steindorff AS, Seong K, Carver A, Calhoun S, Fischer MS, Stillman K, Liu H, Drula E, Henrissat B, Simpson HJ, Schilling JS, Lipzen A, He G, Yan M, Andreopoulos B, Pangilinan J, LaButti K, Ng V, Traxler M, Bruns TD, Grigoriev IV
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.
New Phytol. 2022 Jul 27;():. doi: 10.1111/nph.18407

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.