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Info • Pyrenophora teres f. teres

Status

The genome of P. teres f. teres has been sequenced and assembled from short 200 bp DNA fragment paired-end 75 bp Solexa reads (Ellwood et al, 2010). The assembly is composed of a relatively large number of scaffolds (6,412 greater than 200 bp) due to the difficulty of short read assembly in repetitive regions, while gene-rich and more complex regions are represented. Genes were predicted using GeneMark-ES; only predicted proteins of at least 50 amino acids were included.

Summary statistics for the Pyrenophora teres f. teres v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 33.58
Sequencing read coverage depth 20
# of contigs 6424
# of scaffolds 6412
# of scaffolds >= 2Kbp 1428
Scaffold N50 274
Scaffold L50 (Mbp) 0.04
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.30, 0.22, 0.18


Gene Models ExternalModels
length (bp) of: average median
gene 1525 1256
transcript 1390 1146
exon 555 312
intron 92 56
description:
protein length (aa) 463 382
exons per gene 2.50 2
# of gene models 11799


Collaborators

Genome Reference(s)

Funding

This project was not sequenced at the JGI.